RamiGO: AmiGO visualize R interface

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Deprecated:Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Package details

AuthorMarkus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains
Bioconductor views Classification GO GraphAndNetwork ThirdPartyClient Visualization
MaintainerMarkus Schroeder <markus.schroeder@ucdconnect.ie>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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RamiGO documentation built on May 2, 2018, 3:30 a.m.