AmigoDot.to.Cyto: Opening the AmigoDot graph in Cytoscape through RCytoscape.

In RamiGO: AmiGO visualize R interface

Description

Opening the AmigoDot graph in Cytoscape through RCytoscape.

Usage

AmigoDot.to.Cyto(object)

Arguments

object

is a AmigoDot S4 object.

Details

See http://rcytoscape.systemsbiology.net/versions/current/ and http://www.bioconductor.org/packages/release/bioc/html/RCytoscape.html for details on how to install and use RCytoscape.

Author(s)

Markus Schroeder <[e-mail]>

Examples

## set GO ID's and color
goIDs <- c("GO:0051130","GO:0019912","GO:0005783")
color <- c("lightblue","red","yellow")

dd <- getAmigoTree(goIDs=goIDs,color=color,
  filename="example",picType="dot",saveResult=FALSE)
tt <- readAmigoDot(object=dd)
#AmigoDot.to.Cyto(tt)

RamiGO documentation built on May 2, 2018, 3:30 a.m.