goseq: Gene Ontology analyser for RNA-seq and other length biased data

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author
Matthew Young
Date of publication
None
Maintainer
Nadia Davidson <nadia.davidson@mcri.edu.au>, Anthony Hawkins <anthony.hawkins@mcri.edu.au>
License
LGPL (>= 2)
Version
1.26.0

View on Bioconductor

Man pages

genes
Androgen stimulation of prostate cancer Cell lines.
getgo
Fetch GO categories
getlength
Retrieves Gene length data
goseq
goseq Gene Ontology analyser
makespline
Monotonic Spline
nullp
Probability Weighting Function
plotPWF
Plot the Probability Weighting Function
supportedOrganisms
Supported Organisms

Files in this package

goseq/DESCRIPTION
goseq/NAMESPACE
goseq/R
goseq/R/getgo.R
goseq/R/getlength.R
goseq/R/goseq.R
goseq/R/makespline.R
goseq/R/nullp.R
goseq/R/plotPWF.R
goseq/R/pp.R
goseq/R/reversemapping.R
goseq/R/supportedOrganisms.R
goseq/R/zzz.R
goseq/build
goseq/build/vignette.rds
goseq/data
goseq/data/genes.RData
goseq/inst
goseq/inst/CITATION
goseq/inst/doc
goseq/inst/doc/goseq.R
goseq/inst/doc/goseq.Rnw
goseq/inst/doc/goseq.pdf
goseq/inst/extdata
goseq/inst/extdata/Li_sum.txt
goseq/man
goseq/man/genes.Rd
goseq/man/getgo.Rd
goseq/man/getlength.Rd
goseq/man/goseq.Rd
goseq/man/makespline.Rd
goseq/man/nullp.Rd
goseq/man/plotPWF.Rd
goseq/man/supportedOrganisms.Rd
goseq/vignettes
goseq/vignettes/goseq.Rnw
goseq/vignettes/goseq_bib.bib