goseq: Gene Ontology analyser for RNA-seq and other length biased data

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("goseq")
AuthorMatthew Young
Bioconductor views GO GeneExpression RNASeq Sequencing Transcription
Date of publicationNone
MaintainerNadia Davidson <nadia.davidson@mcri.edu.au>, Anthony Hawkins <anthony.hawkins@mcri.edu.au>
LicenseLGPL (>= 2)
Version1.28.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/getgo.R R/getlength.R R/goseq.R R/makespline.R R/nullp.R R/plotPWF.R R/pp.R R/reversemapping.R R/supportedOrganisms.R R/zzz.R
build
build/vignette.rds
data
data/genes.RData
inst
inst/CITATION
inst/doc
inst/doc/goseq.R
inst/doc/goseq.Rnw
inst/doc/goseq.pdf
inst/extdata
inst/extdata/Li_sum.txt
man
man/genes.Rd man/getgo.Rd man/getlength.Rd man/goseq.Rd man/makespline.Rd man/nullp.Rd man/plotPWF.Rd man/supportedOrganisms.Rd
vignettes
vignettes/goseq.Rnw
vignettes/goseq_bib.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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