GOstats: Tools for manipulating GO and microarrays.

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

AuthorR. Gentleman and S. Falcon
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version2.40.0

View on Bioconductor

Functions

. Man page
Bdists Man page
combGOGraph Man page
compCorrGraph Man page
compGdist Man page
conditional,GOHyperGResult-method Man page
enumPairs Man page
expectedCounts,GOHyperGResult-method Man page
geneCounts,GOHyperGResult-method Man page
geneIdUniverse,GOHyperGResult-method Man page
getGoGraph Man page
goDag Man page
goDag,GOHyperGResult-method Man page
GOGraph Man page
GOHyperG Man page
GOHyperGResult-class Man page
GOKEGGHyperG Man page
GOLeaves Man page
GOstats Man page
GOstats-defunct Man page
GOstats-package Man page
htmlReport,GOHyperGResult-method Man page
hyperG2Affy Man page
hyperGtable Man page
hyperGTest Man page
hyperGTest,GOHyperGParams-method Man page
idx2dimnames Man page
inducedTermGraph Man page
isTriad Man page
makeGOGraph Man page
Ndists Man page
notConn Man page
oddsRatios,GOHyperGResult-method Man page
oneGOGraph Man page
plotGOTermGraph Man page
probeSetSummary Man page
pvalues,GOHyperGResult-method Man page
reduce2Degreek Man page
selectedGenes Man page
shortestPath Man page
simLL Man page
simLP Man page
simUI Man page
summary,GOHyperGResult-method Man page
termGraphs Man page
triad Man page
triadCensus Man page

Files

GOstats/DESCRIPTION
GOstats/NAMESPACE
GOstats/R
GOstats/R/AllClasses.R GOstats/R/AllGenerics.R GOstats/R/GOHyperGResult-accessors.R GOstats/R/GOgraph.R GOstats/R/GOhyptest.R GOstats/R/hyperGTest-methods.R GOstats/R/hyperGtable.R GOstats/R/shortestPath.R GOstats/R/triad.R GOstats/R/zzz.R
GOstats/build
GOstats/build/vignette.rds
GOstats/data
GOstats/data/Bdists.rda
GOstats/data/Ndists.rda
GOstats/inst
GOstats/inst/CITATION
GOstats/inst/Scripts
GOstats/inst/Scripts/TESTP.R
GOstats/inst/Scripts/distance.R
GOstats/inst/UnitTests
GOstats/inst/UnitTests/ghgans10.rda
GOstats/inst/UnitTests/hyperGTest_test.R
GOstats/inst/doc
GOstats/inst/doc/GOstatsForUnsupportedOrganisms.R
GOstats/inst/doc/GOstatsForUnsupportedOrganisms.Rnw
GOstats/inst/doc/GOstatsForUnsupportedOrganisms.pdf
GOstats/inst/doc/GOstatsHyperG.R
GOstats/inst/doc/GOstatsHyperG.Rnw
GOstats/inst/doc/GOstatsHyperG.pdf
GOstats/inst/doc/GOvis.R
GOstats/inst/doc/GOvis.Rnw
GOstats/inst/doc/GOvis.pdf
GOstats/man
GOstats/man/GOHyperGResult-class.Rd GOstats/man/GOstats-defunct.Rd GOstats/man/GOstats-package.Rd GOstats/man/Ndists.Rd GOstats/man/compCorrGraph.Rd GOstats/man/compGdist.Rd GOstats/man/hyperGTest.Rd GOstats/man/idx2dimnames.Rd GOstats/man/makeGOGraph.Rd GOstats/man/notConn.Rd GOstats/man/oneGOGraph.Rd GOstats/man/probeSetSummary.Rd GOstats/man/shortestPath.Rd GOstats/man/simLL.Rd GOstats/man/termGraphs.Rd GOstats/man/triadCensus.Rd
GOstats/tests
GOstats/tests/runTests.R
GOstats/vignettes
GOstats/vignettes/GOstats.bib
GOstats/vignettes/GOstatsForUnsupportedOrganisms.Rnw
GOstats/vignettes/GOstatsHyperG.Rnw
GOstats/vignettes/GOvis.Rnw
GOstats/vignettes/mygraph.jpg
GOstats/vignettes/pco2

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.