A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author | R. Gentleman and S. Falcon |

Date of publication | None |

Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |

License | Artistic-2.0 |

Version | 2.40.0 |

**compCorrGraph:** A function to compute a correlation based graph from Gene...

**compGdist:** A function to compute the distance between pairs of nodes in...

**GOHyperGResult-class:** Class "GOHyperGResult"

**GOstats-defunct:** Defunct Functions in GOstats Package

**GOstats-package:** Tools for manipulating GO and microarrays.

**hyperGTest:** Hypergeometric Tests for GO term association

**idx2dimnames:** Index to Dimnames

**makeGOGraph:** Construct a GO Graph

**Ndists:** Distance matrices for the BCR/ABL and NEG subgroups.

**notConn:** Find genes that are not connected to the others.

**oneGOGraph:** Construct the GO graph given a set of leaves.

**probeSetSummary:** Summarize Probe Sets Associated with a hyperGTest Result

**shortestPath:** Shortest Path Analysis

**simLL:** Functions to compute similarities between GO graphs and also...

**termGraphs:** Extraction and Plotting of GO Terms from a GOHyperGResult...

**triadCensus:** Triad Functions

GOstats/DESCRIPTION

GOstats/NAMESPACE

GOstats/R

GOstats/R/AllClasses.R
GOstats/R/AllGenerics.R
GOstats/R/GOHyperGResult-accessors.R
GOstats/R/GOgraph.R
GOstats/R/GOhyptest.R
GOstats/R/hyperGTest-methods.R
GOstats/R/hyperGtable.R
GOstats/R/shortestPath.R
GOstats/R/triad.R
GOstats/R/zzz.R
GOstats/build

GOstats/build/vignette.rds

GOstats/data

GOstats/data/Bdists.rda

GOstats/data/Ndists.rda

GOstats/inst

GOstats/inst/CITATION

GOstats/inst/Scripts

GOstats/inst/Scripts/TESTP.R

GOstats/inst/Scripts/distance.R

GOstats/inst/UnitTests

GOstats/inst/UnitTests/ghgans10.rda

GOstats/inst/UnitTests/hyperGTest_test.R

GOstats/inst/doc

GOstats/inst/doc/GOstatsForUnsupportedOrganisms.R

GOstats/inst/doc/GOstatsForUnsupportedOrganisms.Rnw

GOstats/inst/doc/GOstatsForUnsupportedOrganisms.pdf

GOstats/inst/doc/GOstatsHyperG.R

GOstats/inst/doc/GOstatsHyperG.Rnw

GOstats/inst/doc/GOstatsHyperG.pdf

GOstats/inst/doc/GOvis.R

GOstats/inst/doc/GOvis.Rnw

GOstats/inst/doc/GOvis.pdf

GOstats/man

GOstats/man/GOHyperGResult-class.Rd
GOstats/man/GOstats-defunct.Rd
GOstats/man/GOstats-package.Rd
GOstats/man/Ndists.Rd
GOstats/man/compCorrGraph.Rd
GOstats/man/compGdist.Rd
GOstats/man/hyperGTest.Rd
GOstats/man/idx2dimnames.Rd
GOstats/man/makeGOGraph.Rd
GOstats/man/notConn.Rd
GOstats/man/oneGOGraph.Rd
GOstats/man/probeSetSummary.Rd
GOstats/man/shortestPath.Rd
GOstats/man/simLL.Rd
GOstats/man/termGraphs.Rd
GOstats/man/triadCensus.Rd
GOstats/tests

GOstats/tests/runTests.R

GOstats/vignettes

GOstats/vignettes/GOstats.bib

GOstats/vignettes/GOstatsForUnsupportedOrganisms.Rnw

GOstats/vignettes/GOstatsHyperG.Rnw

GOstats/vignettes/GOvis.Rnw

GOstats/vignettes/mygraph.jpg

GOstats/vignettes/pco2

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.