GOstats: Tools for manipulating GO and microarrays.

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GOstats")
AuthorR. Gentleman and S. Falcon
Bioconductor views Annotation GO GeneExpression GeneSetEnrichment GraphAndNetwork Microarray MultipleComparison Pathways
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version2.42.0

View on Bioconductor

Functions

. Man page
Bdists Man page
combGOGraph Man page
compCorrGraph Man page
compGdist Man page
conditional,GOHyperGResult-method Man page
enumPairs Man page
expectedCounts,GOHyperGResult-method Man page
geneCounts,GOHyperGResult-method Man page
geneIdUniverse,GOHyperGResult-method Man page
getGoGraph Man page
goDag Man page
goDag,GOHyperGResult-method Man page
GOGraph Man page
GOHyperG Man page
GOHyperGResult-class Man page
GOKEGGHyperG Man page
GOLeaves Man page
GOstats Man page
GOstats-defunct Man page
GOstats-package Man page
htmlReport,GOHyperGResult-method Man page
hyperG2Affy Man page
hyperGtable Man page
hyperGTest Man page
hyperGTest,GOHyperGParams-method Man page
idx2dimnames Man page
inducedTermGraph Man page
isTriad Man page
makeGOGraph Man page
Ndists Man page
notConn Man page
oddsRatios,GOHyperGResult-method Man page
oneGOGraph Man page
plotGOTermGraph Man page
probeSetSummary Man page
pvalues,GOHyperGResult-method Man page
reduce2Degreek Man page
selectedGenes Man page
shortestPath Man page
simLL Man page
simLP Man page
simUI Man page
summary,GOHyperGResult-method Man page
termGraphs Man page
triad Man page
triadCensus Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/AllGenerics.R R/GOHyperGResult-accessors.R R/GOgraph.R R/GOhyptest.R R/hyperGTest-methods.R R/hyperGtable.R R/shortestPath.R R/triad.R R/zzz.R
build
build/vignette.rds
data
data/Bdists.rda
data/Ndists.rda
inst
inst/CITATION
inst/Scripts
inst/Scripts/TESTP.R inst/Scripts/distance.R
inst/UnitTests
inst/UnitTests/ghgans10.rda
inst/UnitTests/hyperGTest_test.R
inst/doc
inst/doc/GOstatsForUnsupportedOrganisms.R
inst/doc/GOstatsForUnsupportedOrganisms.Rnw
inst/doc/GOstatsForUnsupportedOrganisms.pdf
inst/doc/GOstatsHyperG.R
inst/doc/GOstatsHyperG.Rnw
inst/doc/GOstatsHyperG.pdf
inst/doc/GOvis.R
inst/doc/GOvis.Rnw
inst/doc/GOvis.pdf
man
man/GOHyperGResult-class.Rd man/GOstats-defunct.Rd man/GOstats-package.Rd man/Ndists.Rd man/compCorrGraph.Rd man/compGdist.Rd man/hyperGTest.Rd man/idx2dimnames.Rd man/makeGOGraph.Rd man/notConn.Rd man/oneGOGraph.Rd man/probeSetSummary.Rd man/shortestPath.Rd man/simLL.Rd man/termGraphs.Rd man/triadCensus.Rd
tests
tests/runTests.R
vignettes
vignettes/GOstats.bib
vignettes/GOstatsForUnsupportedOrganisms.Rnw
vignettes/GOstatsHyperG.Rnw
vignettes/GOvis.Rnw
vignettes/mygraph.jpg
vignettes/pco2

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.