GOstats: Tools for manipulating GO and microarrays.

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A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author
R. Gentleman and S. Falcon
Date of publication
None
Maintainer
Bioconductor Package Maintainer <maintainer@bioconductor.org>
License
Artistic-2.0
Version
2.40.0

View on Bioconductor

Man pages

compCorrGraph
A function to compute a correlation based graph from Gene...
compGdist
A function to compute the distance between pairs of nodes in...
GOHyperGResult-class
Class "GOHyperGResult"
GOstats-defunct
Defunct Functions in GOstats Package
GOstats-package
Tools for manipulating GO and microarrays.
hyperGTest
Hypergeometric Tests for GO term association
idx2dimnames
Index to Dimnames
makeGOGraph
Construct a GO Graph
Ndists
Distance matrices for the BCR/ABL and NEG subgroups.
notConn
Find genes that are not connected to the others.
oneGOGraph
Construct the GO graph given a set of leaves.
probeSetSummary
Summarize Probe Sets Associated with a hyperGTest Result
shortestPath
Shortest Path Analysis
simLL
Functions to compute similarities between GO graphs and also...
termGraphs
Extraction and Plotting of GO Terms from a GOHyperGResult...
triadCensus
Triad Functions

Files in this package

GOstats/DESCRIPTION
GOstats/NAMESPACE
GOstats/R
GOstats/R/AllClasses.R
GOstats/R/AllGenerics.R
GOstats/R/GOHyperGResult-accessors.R
GOstats/R/GOgraph.R
GOstats/R/GOhyptest.R
GOstats/R/hyperGTest-methods.R
GOstats/R/hyperGtable.R
GOstats/R/shortestPath.R
GOstats/R/triad.R
GOstats/R/zzz.R
GOstats/build
GOstats/build/vignette.rds
GOstats/data
GOstats/data/Bdists.rda
GOstats/data/Ndists.rda
GOstats/inst
GOstats/inst/CITATION
GOstats/inst/Scripts
GOstats/inst/Scripts/TESTP.R
GOstats/inst/Scripts/distance.R
GOstats/inst/UnitTests
GOstats/inst/UnitTests/ghgans10.rda
GOstats/inst/UnitTests/hyperGTest_test.R
GOstats/inst/doc
GOstats/inst/doc/GOstatsForUnsupportedOrganisms.R
GOstats/inst/doc/GOstatsForUnsupportedOrganisms.Rnw
GOstats/inst/doc/GOstatsForUnsupportedOrganisms.pdf
GOstats/inst/doc/GOstatsHyperG.R
GOstats/inst/doc/GOstatsHyperG.Rnw
GOstats/inst/doc/GOstatsHyperG.pdf
GOstats/inst/doc/GOvis.R
GOstats/inst/doc/GOvis.Rnw
GOstats/inst/doc/GOvis.pdf
GOstats/man
GOstats/man/GOHyperGResult-class.Rd
GOstats/man/GOstats-defunct.Rd
GOstats/man/GOstats-package.Rd
GOstats/man/Ndists.Rd
GOstats/man/compCorrGraph.Rd
GOstats/man/compGdist.Rd
GOstats/man/hyperGTest.Rd
GOstats/man/idx2dimnames.Rd
GOstats/man/makeGOGraph.Rd
GOstats/man/notConn.Rd
GOstats/man/oneGOGraph.Rd
GOstats/man/probeSetSummary.Rd
GOstats/man/shortestPath.Rd
GOstats/man/simLL.Rd
GOstats/man/termGraphs.Rd
GOstats/man/triadCensus.Rd
GOstats/tests
GOstats/tests/runTests.R
GOstats/vignettes
GOstats/vignettes/GOstats.bib
GOstats/vignettes/GOstatsForUnsupportedOrganisms.Rnw
GOstats/vignettes/GOstatsHyperG.Rnw
GOstats/vignettes/GOvis.Rnw
GOstats/vignettes/mygraph.jpg
GOstats/vignettes/pco2