A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.
|Author||R. Gentleman and S. Falcon|
|Date of publication||None|
|Maintainer||Bioconductor Package Maintainer <email@example.com>|
compCorrGraph: A function to compute a correlation based graph from Gene...
compGdist: A function to compute the distance between pairs of nodes in...
GOHyperGResult-class: Class "GOHyperGResult"
GOstats-defunct: Defunct Functions in GOstats Package
GOstats-package: Tools for manipulating GO and microarrays.
hyperGTest: Hypergeometric Tests for GO term association
idx2dimnames: Index to Dimnames
makeGOGraph: Construct a GO Graph
Ndists: Distance matrices for the BCR/ABL and NEG subgroups.
notConn: Find genes that are not connected to the others.
oneGOGraph: Construct the GO graph given a set of leaves.
probeSetSummary: Summarize Probe Sets Associated with a hyperGTest Result
shortestPath: Shortest Path Analysis
simLL: Functions to compute similarities between GO graphs and also...
termGraphs: Extraction and Plotting of GO Terms from a GOHyperGResult...
triadCensus: Triad Functions