Tools for manipulating GO and microarrays

compCorrGraph | A function to compute a correlation based graph from Gene... |

compGdist | A function to compute the distance between pairs of nodes in... |

GOHyperGResult-class | Class "GOHyperGResult" |

GOstats-defunct | Defunct Functions in GOstats Package |

GOstats-package | Tools for manipulating GO and microarrays. |

hyperGTest | Hypergeometric Tests for GO term association |

idx2dimnames | Index to Dimnames |

makeGOGraph | Construct a GO Graph |

Ndists | Distance matrices for the BCR/ABL and NEG subgroups. |

notConn | Find genes that are not connected to the others. |

OBOHyperGResult-class | Class "OBOHyperGResult" |

oneGOGraph | Construct the GO graph given a set of leaves. |

probeSetSummary | Summarize Probe Sets Associated with a hyperGTest Result |

shortestPath | Shortest Path Analysis |

simLL | Functions to compute similarities between GO graphs and also... |

termGraphs | Extraction and Plotting of GO Terms from a GOHyperGResult... |

triadCensus | Triad Functions |

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