GOstats-package: Tools for manipulating GO and microarrays.
In GOstats: Tools for manipulating GO and microarrays

Description Details Author(s)

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Package:	GOstats
Version:	1.7.4
Date:	23-08-2006
biocViews:	Statistics, Annotation, GO, MultipleComparisons
Depends:	graph (>= 1.9.25), GO, annotate, RBGL, xtable, Biobase, genefilter, multtest, Category (>= 1.3.7), methods
Imports:	methods, Category
Suggests:	hgu95av2.db (>= 1.6.0)
License:	Artistic

Index:

ALL                     Acute Lymphoblastic Leukemia Data from the Ritz
                        Laboratory
GOstats-defunct         Defunct Functions in GOstats Package
Ndists                  Distance matrices for the BCR/ABL and NEG
                        subgroups.
compCorrGraph           A function to compute a correlation based graph
                        from Gene Expression Data
compGdist               A function to compute the distance between
                        pairs of nodes in a graph.
dropECode               Drop GO labels for specified Evidence Codes
getEvidence             Get the Evidence codes for a set of GO terms.
getGOTerm               Functions to Access GO data.
getOntology             Get GO terms for a specified ontology
hasGOannote             Check for GO annotation
idx2dimnames            Index to Dimnames
makeGOGraph             Construct a GO Graph
notConn                 Find genes that are not connected to the
                        others.
oneGOGraph              Construct the GO graph given a set of leaves.
shortestPath            Shortest Path Analysis
simLL                   Functions to compute similarities between GO
                        graphs and also between Entrez Gene IDs based on
                        their induced GO graphs.
triadCensus             Triad Functions