categoryCompare: Meta-analysis of high-throughput experiments using feature annotations

Calculates significant annotations (categories) in each of two (or more) feature (i.e. gene) lists, determines the overlap between the annotations, and returns graphical and tabular data about the significant annotations and which combinations of feature lists the annotations were found to be significant. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).

Package details

AuthorRobert M. Flight <rflight79@gmail.com>
Bioconductor views Annotation GO GeneExpression MultipleComparison Pathways
MaintainerRobert M. Flight <rflight79@gmail.com>
LicenseGPL-2
Version1.34.0
URL https://github.com/rmflight/categoryCompare
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("categoryCompare")

Try the categoryCompare package in your browser

Any scripts or data that you put into this service are public.

categoryCompare documentation built on Nov. 8, 2020, 5:59 p.m.