minCount: minCount

In categoryCompare: Meta-analysis of high-throughput experiments using feature annotations

Description

Extracts and sets the minimum number of genes that an annotation must have to be considered in subsequent steps.

Usage

	minCount(object)

Arguments

object

This will be either a HyperGResultCC, ccEnrichResult, or ccEnrichCollection object. See Details for more information.

Details

minCount(object) fetches the set minCount for HyperGResultCC and ccEnrichResult objects

minCount(object)<- will set the minCount for HyperGResultCC objects, and when applied to ccEnrichResult and ccEnrichCollection sets the minCount for all of the contained objects, so be careful if you want to use different minCounts for different results

Author(s)

Robert M Flight

See Also

HyperGResultCC ccEnrichResult ccEnrichCollection

Examples

data(ccData)
enrichLists
minCount(enrichLists) <- 5
enrichLists

categoryCompare documentation built on Nov. 8, 2020, 5:59 p.m.