ccData: Test data for 'categoryCompare'

In categoryCompare: Meta-analysis of high-throughput experiments using feature annotations

Description

Processed data from the estrogen example data set

Usage

data(ccData)

Format

table10: Log-ratio output from limma for the comparison of presence-absence of estrogen at 10 hours

table48: Log-ratio output from limma for the comparison of presence-absence of estrogen at 48 hours

gUniverse: All of the genes measured on the chip

gseaRes: Toy results of GSEA analysis of 3 different tissues

enrichLists: Apply ccEnrich to a ccGeneList from table10 and table48

ccResults: Apply ccCompare to enrichLists

ccResultsBPHier: Modify enrichLists$BP to use a "hierarchical" layout

geneLists: a ccGeneList generated from genes in table10 and table48

ccOpts: a ccOptions object describing what we are going to do as far as feature list comparisons

Author(s)

Robert M Flight

Source

Taken from the estrogen package in Bioconductor, and then processed using the normal affy and limma tools.

See Also

ccGeneList ccEnrichCollection ccCompareCollection ccEnrich ccCompare

Examples

data(ccData)

categoryCompare documentation built on Nov. 8, 2020, 5:59 p.m.