pvalueType: Type of p-values to return from object

In categoryCompare: Meta-analysis of high-throughput experiments using feature annotations

Description

Queries or sets the type of p-values to return from objects, either base calculated (pvals) or from fdr calculations (fdr)

Usage

	pvalueType(object)

Arguments

object

Can be HyperGResultCC, ccEnrichResult, ccEnrichCollection. See Details for more information

Details

pvalueType(object) gets the type of p-values to be returned from HyperGResultCC and ccEnrichResult objects

pvalueType(object)<- will set the type of p-values to be returned from HyperGResultCC, ccEnrichResult, ccEnrichCollection. Note that for a ccEnrichCollection, the type is changed for all contained ccEnrichResults

Author(s)

Robert M Flight

See Also

HyperGResultCC ccEnrichResult ccEnrichCollection

Examples

# pvalueType-Methods
data(ccData)

## Not run: pvalueType(enrichLists) # this returns an error
pvalueType(enrichLists[[1]])
pvalueType(enrichLists[[1]][[1]])

# change the type for one of the results
pvalueType(enrichLists[[1]]) <- 'pval'  # Not recommended practice
enrichLists

# change for all of the results
pvalueType(enrichLists) <- 'pval'
enrichLists

categoryCompare documentation built on Nov. 8, 2020, 5:59 p.m.