GOSemSim: GO-terms Semantic Similarity Measures

The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.

Package details

AuthorGuangchuang Yu [aut, cre], Alexey Stukalov [ctb], Chuanle Xiao [ctb], Lluís Revilla Sancho [ctb]
Bioconductor views Annotation Clustering GO Network Pathways Software
MaintainerGuangchuang Yu <guangchuangyu@gmail.com>
URL https://yulab-smu.top/biomedical-knowledge-mining-book/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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GOSemSim documentation built on Nov. 8, 2020, 4:52 p.m.