GOSemSim: GO-terms Semantic Similarity Measures

The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.

AuthorGuangchuang Yu <guangchuangyu@gmail.com> with contributions from Alexey Stukalov and Chuanle Xiao.
Date of publicationNone
MaintainerGuangchuang Yu <guangchuangyu@gmail.com>
LicenseArtistic-2.0
Version2.0.4
https://guangchuangyu.github.io/GOSemSim

View on Bioconductor

Files in this package

GOSemSim/DESCRIPTION
GOSemSim/NAMESPACE
GOSemSim/NEWS
GOSemSim/R
GOSemSim/R/GOSemSim-package.R GOSemSim/R/ICMethods.R GOSemSim/R/RcppExports.R GOSemSim/R/WangMethod.R GOSemSim/R/clusterSim.R GOSemSim/R/combineMethods.R GOSemSim/R/computeIC.R GOSemSim/R/gene2GO.R GOSemSim/R/geneSim.R GOSemSim/R/goSim.R GOSemSim/R/godata.R GOSemSim/R/mclusterSim.R GOSemSim/R/mgeneSim.R GOSemSim/R/mgoSim.R GOSemSim/R/termSim.R GOSemSim/R/utilities.R GOSemSim/R/zzz.R
GOSemSim/README.md
GOSemSim/build
GOSemSim/build/vignette.rds
GOSemSim/data
GOSemSim/data/gotbl.rda
GOSemSim/inst
GOSemSim/inst/CITATION
GOSemSim/inst/doc
GOSemSim/inst/doc/GOSemSim.R
GOSemSim/inst/doc/GOSemSim.Rmd
GOSemSim/inst/doc/GOSemSim.html
GOSemSim/man
GOSemSim/man/GOSemSim-package.Rd GOSemSim/man/GOSemSimDATA-class.Rd GOSemSim/man/clusterSim.Rd GOSemSim/man/combineScores.Rd GOSemSim/man/geneSim.Rd GOSemSim/man/goSim.Rd GOSemSim/man/go_term_table.Rd GOSemSim/man/godata.Rd GOSemSim/man/infoContentMethod.Rd GOSemSim/man/load_OrgDb.Rd GOSemSim/man/mclusterSim.Rd GOSemSim/man/mgeneSim.Rd GOSemSim/man/mgoSim.Rd GOSemSim/man/termSim.Rd GOSemSim/man/wangMethod_internal.Rd
GOSemSim/src
GOSemSim/src/ICmethod.cpp
GOSemSim/src/RcppExports.cpp
GOSemSim/tests
GOSemSim/tests/testthat
GOSemSim/tests/testthat.R
GOSemSim/tests/testthat/test-GO.R
GOSemSim/tests/testthat/test-Wang.R
GOSemSim/tests/testthat/test-load_OrgDb.R
GOSemSim/vignettes
GOSemSim/vignettes/GOSemSim.Rmd
GOSemSim/vignettes/GOSemSim.bib
GOSemSim/vignettes/nature.csl

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