goProfiles: goProfiles: an R package for the statistical analysis of functional profiles

The package implements methods to compare lists of genes based on comparing the corresponding 'functional profiles'.

AuthorAlex Sanchez, Jordi Ocana and Miquel Salicru
Date of publicationNone
MaintainerAlex Sanchez <asanchez@ub.edu>
LicenseGPL-2
Version1.36.0
http://eib.stat.ub.edu/goProfiles

View on Bioconductor

Files in this package

goProfiles/DESCRIPTION
goProfiles/NAMESPACE
goProfiles/R
goProfiles/R/BioCpack2EntrezIDS.R goProfiles/R/BioCpack2Profiles.R goProfiles/R/BioCprobes2Entrez.R goProfiles/R/GOTermsFrame2GOTermsList.R goProfiles/R/GOTermsList.R goProfiles/R/as.ExpandedGOProfile.ExpandedGOProfile.R goProfiles/R/as.ExpandedGOProfile.R goProfiles/R/as.ExpandedGOProfile.default.R goProfiles/R/as.GOTerms.frame.R goProfiles/R/as.GOTerms.list.R goProfiles/R/basicProfile.R goProfiles/R/belongs.to.R goProfiles/R/chiDisjoint.R goProfiles/R/chiIntersect.R goProfiles/R/chiPnP0Correct.R goProfiles/R/chiRestrict.R goProfiles/R/compSummary.R
goProfiles/R/compareGOProfiles.R
goProfiles/R/compareGeneLists.R goProfiles/R/compareProfilesLists.R goProfiles/R/completeMat.R goProfiles/R/completeNames.R goProfiles/R/contrMatrix.R goProfiles/R/contractCol.R goProfiles/R/contractedProfile.R
goProfiles/R/contrast.r
goProfiles/R/covGO.ExpandedGOProfile.R
goProfiles/R/covGO.R
goProfiles/R/covGO.default.R
goProfiles/R/coverage.r
goProfiles/R/dEuclid2.R goProfiles/R/dgetGO.R goProfiles/R/dimsGO.R
goProfiles/R/equivSummary.r
goProfiles/R/equivalentGOProfiles.R goProfiles/R/estimProbPrecision.R goProfiles/R/expandCol.R goProfiles/R/expandNames.R goProfiles/R/expandRndGO.R goProfiles/R/expandTerm.R goProfiles/R/expandedLevel.R goProfiles/R/expandedProfile.R goProfiles/R/fisherGOProfiles.R
goProfiles/R/fitGOProfile.R
goProfiles/R/frelGO.R goProfiles/R/fullGOProfile.R goProfiles/R/fullSetOfNames.R goProfiles/R/generate.multinomial.R goProfiles/R/geometricProfile.R goProfiles/R/getAncestorsLst.R goProfiles/R/getGOLevel.R goProfiles/R/has.element.R goProfiles/R/has.ngenes.attr.R goProfiles/R/has.numGenes.attr.R goProfiles/R/haveEntrezID.R goProfiles/R/haveGO.R goProfiles/R/idEuclid2.R goProfiles/R/idEuclid2P0.R
goProfiles/R/internal.compareGOProf.R
goProfiles/R/internal.covGO.R goProfiles/R/internal.enrich.R goProfiles/R/internal.enrichProfile.R goProfiles/R/internal.equivalentGOProf.R
goProfiles/R/internal.fitGOProf.R
goProfiles/R/internal.varDifStatPP0.R goProfiles/R/internal.varDifStatPnQm.R goProfiles/R/ipvalueP1Q1PQLinCombChisq.R goProfiles/R/ipvaluePQLinCombChisq.R goProfiles/R/ipvaluePnP0LinCombChisq.R goProfiles/R/ipvaluePnPmLinCombChisq.R goProfiles/R/lcombChisqParsOK.R goProfiles/R/lenGO.R goProfiles/R/meanICLength.R goProfiles/R/mergeProfiles.R goProfiles/R/mergeProfilesLists.R goProfiles/R/multinomial.R goProfiles/R/ngenes.BasicGOProfile.R goProfiles/R/ngenes.ExpandedGOProfile.R goProfiles/R/ngenes.default.R goProfiles/R/ngenes.i.R goProfiles/R/ngenes.matrix.R goProfiles/R/ngenes.numeric.R
goProfiles/R/ngenes.r
goProfiles/R/niceProfile.R goProfiles/R/normIntLength.R goProfiles/R/plcombChisq.R goProfiles/R/plotProfiles.R goProfiles/R/printProfiles.R goProfiles/R/pvalueExcludingLinCombChisq.R goProfiles/R/pvalueIntersectLinCombChisq.R goProfiles/R/pvaluePnP0LinCombChisq.R goProfiles/R/pvalueRestrictLinCombChisq.R goProfiles/R/qlcombChisq.R goProfiles/R/rawProfile.R goProfiles/R/reset.generation.multinomial.R goProfiles/R/rlcombChisq.R goProfiles/R/rndExpandedGOProfile.R goProfiles/R/rndGO.R goProfiles/R/seDifStatPP0.R goProfiles/R/seDifStatPnQm.R goProfiles/R/secondOrderMarginals.R goProfiles/R/setN.multinomial.R goProfiles/R/shortName.R goProfiles/R/sigma.excluding.R goProfiles/R/sigma.intersect.R goProfiles/R/sigma.restrict.R goProfiles/R/sum.and.R goProfiles/R/sum.if.R goProfiles/R/table2xs.R goProfiles/R/toNumVec.R
goProfiles/R/varDifStatPP0.ExpandedGOProfile.R
goProfiles/R/varDifStatPP0.R
goProfiles/R/varDifStatPP0.default.R goProfiles/R/varDifStatPnQm.R goProfiles/R/vecProfile.R
goProfiles/build
goProfiles/build/vignette.rds
goProfiles/data
goProfiles/data/CD4Ids.rda
goProfiles/data/drosophila.rda
goProfiles/data/hugoIds.rda
goProfiles/data/omimIds.rda
goProfiles/data/prostateIds.rda
goProfiles/inst
goProfiles/inst/doc
goProfiles/inst/doc/goProfiles.R
goProfiles/inst/doc/goProfiles.Rnw
goProfiles/inst/doc/goProfiles.pdf
goProfiles/man
goProfiles/man/CD4ids.Rd goProfiles/man/GOTermsList.Rd goProfiles/man/basicProfile.Rd goProfiles/man/compSummary.Rd goProfiles/man/compareGOProfiles.Rd goProfiles/man/compareGeneLists.Rd goProfiles/man/compareProfilesLists.Rd
goProfiles/man/contractedProfile.rd
goProfiles/man/conversionFunctions.Rd goProfiles/man/drosophila.Rd goProfiles/man/equivSummary.Rd goProfiles/man/equivalentGOProfiles.Rd goProfiles/man/expandedLevel.Rd goProfiles/man/expandedProfile.Rd goProfiles/man/fisherGOProfiles.Rd goProfiles/man/fitGOProfile.Rd goProfiles/man/goProfiles-package.Rd goProfiles/man/hugoIds.Rd goProfiles/man/mergeProfilesLists.Rd
goProfiles/man/ngenes.rd
goProfiles/man/omimIds.Rd goProfiles/man/plotProfiles.Rd goProfiles/man/printProfiles.Rd goProfiles/man/prostateIds.Rd
goProfiles/vignettes
goProfiles/vignettes/fancyhdr.sty
goProfiles/vignettes/goProfiles.Rnw

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