prostateIds: Prostate cancer-related genes

In goProfiles: goProfiles: an R package for the statistical analysis of functional profiles

Description

Entrez identifiers for genes related with Prostate Cancer selected from two datasets analyzed by Welsh et al. (2001) and Singh et al. (2002) respectively. The genes have been selected from freely available datasets in the internet using a standard workflow for selecting differentially expressed genes. The dataset contains 4 character vectors, each corresponding to the entrez identifiers of the genes selected at a 5% and 1% significance level from the Welsh and Singh dataset respectively.

welsh05EntrezIDs

List of genes selected from Welsh et al. study at a 0.05 significance level.

welsh01EntrezIDs

List of genes selected from Welsh et al. study at a 0.01 significance level.

singh05EntrezIDs

List of genes selected from Singh et al. study at a 0.05 significance level.

singh01EntrezIDs

List of genes selected from Singh et al. study at a 0.01 significance level.

Usage

data(prostateIds)

Format

Each dataset is a character vector with a different number of elements which (should) correspond to valid Entrez identifiers

Source

• John B. Welsh, Lisa M. Sapinoso, Andrew I. Su, Suzanne G. Kern, Jessica Wang-Rodriguez,

  Christopher A. Moskaluk, Jr. Frierson, Henry F., and Garret M. Hampton. Analysis of Gene

  Expression Identifies Candidate Markers and Pharmacological Targets in Prostate Cancer.

  Cancer Res, 61(16):5974-5978, 2001.

• Singh, Dinesh and Febbo, Phillip G and Ross, Kenneth and Jackson, Donald G and Manola, Judith and Ladd, Christine and Tamayo, Pablo and Renshaw, Andrew A and D'Amico, Anthony V and Richie, Jerome P and Lander, Eric S and Loda, Massimo and Kantoff, Philip W and Golub, Todd R and Sellers, William R.Gene expression correlates of clinical prostate cancer behavior. Cancer Cell, 2002, Mar., 1(2) 203-209, 2002.

Examples

data(prostateIds)

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: GO.db

goProfiles documentation built on Nov. 8, 2020, 8:12 p.m.