pcaGoPromoter: pcaGoPromoter is used to analyze DNA micro array data

This package contains functions to ease the analyses of DNA micro arrays. It utilizes principal component analysis as the initial multivariate analysis, followed by functional interpretation of the principal component dimensions with overrepresentation analysis for GO terms and regulatory interpretations using overrepresentation analysis of predicted transcription factor binding sites with the primo algorithm.

AuthorMorten Hansen, Jorgen Olsen
Date of publicationNone
MaintainerMorten Hansen <mhansen@sund.ku.dk>
LicenseGPL (>= 2)
Version1.18.0

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Files in this package

pcaGoPromoter/DESCRIPTION
pcaGoPromoter/NAMESPACE
pcaGoPromoter/R
pcaGoPromoter/R/GOtree.R pcaGoPromoter/R/common.R pcaGoPromoter/R/pca.R pcaGoPromoter/R/primo.R pcaGoPromoter/R/primoData.R
pcaGoPromoter/build
pcaGoPromoter/build/vignette.rds
pcaGoPromoter/inst
pcaGoPromoter/inst/CITATION
pcaGoPromoter/inst/doc
pcaGoPromoter/inst/doc/pcaGoPromoter.R
pcaGoPromoter/inst/doc/pcaGoPromoter.Rnw
pcaGoPromoter/inst/doc/pcaGoPromoter.pdf
pcaGoPromoter/man
pcaGoPromoter/man/GOtree.Rd pcaGoPromoter/man/pca.Rd pcaGoPromoter/man/pcaGoPromoter-package.Rd pcaGoPromoter/man/primo.Rd pcaGoPromoter/man/primoData.Rd
pcaGoPromoter/vignettes
pcaGoPromoter/vignettes/pcaGoPromoter.Rnw

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