API for pcaGoPromoter
pcaGoPromoter is used to analyze DNA micro array data

Global functions
GOtree Man page Source code
GOtreeHits Man page Source code
GOtreeWithLeaveOut Man page Source code
cleanUpTargetSet Source code
convertFromProbeIdsToRefseqs Source code
convertInput Source code
dropVarNull Source code
getGOidsInOntology Source code
getGOidsWithChildren Source code
getGOsDownTree Source code
getMatricesWithHits Source code
getRankedProbeIds Man page Source code
getRankedProbeIds.pca Man page Source code
getSigGOTermsOnce Source code
indexOfDupletsList Source code
leaveOutFindPvalues Source code
makeGOtreeRgraphviz Source code
multiPca Source code
newSearchGOtreeForTerms Source code
pca Man page Source code
pcaGoPromoter Man page
pcaGoPromoter-package Man page
pcaInfoPlot Man page Source code
pcaLeaveOut Source code
plot.GOtree Man page Source code
plot.pca Man page Source code
primo Man page Source code
primoData Man page Source code
primoData.convertPromoterFromTextToNumbers Source code
primoData.convertToNumbers Source code
primoData.findDubletSequences Source code
primoData.findDublets Source code
primoData.getAllThresholds Source code
primoData.getPromoters Source code
primoData.getPwmValuesInPromotersFast Source code
primoData.getThresholdNew Source code
primoData.removeBadSequences Source code
primoHits Man page Source code
primoWithLeaveOut Man page Source code
print.GOtree Man page Source code
print.pca Man page Source code
printAnnText Source code
printAnnotation Source code
pcaGoPromoter documentation built on May 2, 2018, 2:08 a.m.