GOsummaries: Word cloud summaries of GO enrichment analysis

A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.

AuthorRaivo Kolde <raivo.kolde@eesti.ee>
Date of publicationNone
MaintainerRaivo Kolde <raivo.kolde@eesti.ee>
LicenseGPL (>= 2)
Version2.8.0
https://github.com/raivokolde/GOsummaries

View on Bioconductor

Functions

add_expression.gosummaries Man page
add_to_slot.gosummaries Man page
customize Man page
gosummaries Man page
[.gosummaries Man page
GOsummaries Man page
gosummaries.default Man page
gosummaries.kmeans Man page
gosummaries.MArrayLM Man page
gosummaries.matrix Man page
GOsummaries-package Man page
gosummaries.prcomp Man page
gs_kmeans Man page
gs_limma Man page
gs_limma_exp Man page
gs_pca Man page
is.gosummaries Man page
metabolomic_example Man page
metagenomic_example Man page
panel_boxplot Man page
panel_boxplot_classes Man page
panel_violin Man page
panel_violin_box Man page
panel_violin_box_classes Man page
panel_violin_classes Man page
plot.gosummaries Man page
plotWordcloud Man page
print.gosummaries Man page
tissue_example Man page

Files

GOsummaries/DESCRIPTION
GOsummaries/NAMESPACE
GOsummaries/NEWS
GOsummaries/R
GOsummaries/R/GOsummaries-package.R GOsummaries/R/GOsummaries.R GOsummaries/R/exampleDatasets.R GOsummaries/R/wordcloud.R
GOsummaries/README.md
GOsummaries/build
GOsummaries/build/vignette.rds
GOsummaries/data
GOsummaries/data/datalist
GOsummaries/data/gs_kmeans.rda
GOsummaries/data/gs_limma.rda
GOsummaries/data/gs_limma_exp.rda
GOsummaries/data/gs_pca.rda
GOsummaries/data/metabolomic_example.RData
GOsummaries/data/metagenomic_example.RData
GOsummaries/data/tissue_example.RData
GOsummaries/inst
GOsummaries/inst/CITATION
GOsummaries/inst/doc
GOsummaries/inst/doc/GOsummaries-basics.R
GOsummaries/inst/doc/GOsummaries-basics.Rnw
GOsummaries/inst/doc/GOsummaries-basics.pdf
GOsummaries/man
GOsummaries/man/GOsummaries-package.Rd GOsummaries/man/add_expression.gosummaries.Rd GOsummaries/man/add_to_slot.gosummaries.Rd GOsummaries/man/customize.Rd GOsummaries/man/gosummaries.MArrayLM.Rd GOsummaries/man/gosummaries.Rd GOsummaries/man/gosummaries.kmeans.Rd GOsummaries/man/gosummaries.matrix.Rd GOsummaries/man/gosummaries.prcomp.Rd GOsummaries/man/metabolomic_example.Rd GOsummaries/man/metagenomic_example.Rd GOsummaries/man/panel_boxplot.Rd GOsummaries/man/plot.gosummaries.Rd GOsummaries/man/plotWordcloud.Rd GOsummaries/man/tissue_example.Rd
GOsummaries/src
GOsummaries/src/Makevars
GOsummaries/src/Makevars.win
GOsummaries/src/findCoordinates.cpp
GOsummaries/vignettes
GOsummaries/vignettes/GOsummaries-basics.Rnw
GOsummaries/vignettes/GS.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.