GOsummaries: Word cloud summaries of GO enrichment analysis

A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.

AuthorRaivo Kolde <raivo.kolde@eesti.ee>
Date of publicationNone
MaintainerRaivo Kolde <raivo.kolde@eesti.ee>
LicenseGPL (>= 2)
Version2.8.0
https://github.com/raivokolde/GOsummaries

View on Bioconductor

Files in this package

GOsummaries/DESCRIPTION
GOsummaries/NAMESPACE
GOsummaries/NEWS
GOsummaries/R
GOsummaries/R/GOsummaries-package.R GOsummaries/R/GOsummaries.R GOsummaries/R/exampleDatasets.R GOsummaries/R/wordcloud.R
GOsummaries/README.md
GOsummaries/build
GOsummaries/build/vignette.rds
GOsummaries/data
GOsummaries/data/datalist
GOsummaries/data/gs_kmeans.rda
GOsummaries/data/gs_limma.rda
GOsummaries/data/gs_limma_exp.rda
GOsummaries/data/gs_pca.rda
GOsummaries/data/metabolomic_example.RData
GOsummaries/data/metagenomic_example.RData
GOsummaries/data/tissue_example.RData
GOsummaries/inst
GOsummaries/inst/CITATION
GOsummaries/inst/doc
GOsummaries/inst/doc/GOsummaries-basics.R
GOsummaries/inst/doc/GOsummaries-basics.Rnw
GOsummaries/inst/doc/GOsummaries-basics.pdf
GOsummaries/man
GOsummaries/man/GOsummaries-package.Rd GOsummaries/man/add_expression.gosummaries.Rd GOsummaries/man/add_to_slot.gosummaries.Rd GOsummaries/man/customize.Rd GOsummaries/man/gosummaries.MArrayLM.Rd GOsummaries/man/gosummaries.Rd GOsummaries/man/gosummaries.kmeans.Rd GOsummaries/man/gosummaries.matrix.Rd GOsummaries/man/gosummaries.prcomp.Rd GOsummaries/man/metabolomic_example.Rd GOsummaries/man/metagenomic_example.Rd GOsummaries/man/panel_boxplot.Rd GOsummaries/man/plot.gosummaries.Rd GOsummaries/man/plotWordcloud.Rd GOsummaries/man/tissue_example.Rd
GOsummaries/src
GOsummaries/src/Makevars
GOsummaries/src/Makevars.win
GOsummaries/src/findCoordinates.cpp
GOsummaries/vignettes
GOsummaries/vignettes/GOsummaries-basics.Rnw
GOsummaries/vignettes/GS.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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