gep2pep: Creation and Analysis of Pathway Expression Profiles (PEPs)

Pathway Expression Profiles (PEPs) are based on the expression of pathways (defined as sets of genes) as opposed to individual genes. This package converts gene expression profiles to PEPs and performs enrichment analysis of both pathways and experimental conditions, such as "drug set enrichment analysis" and "gene2drug" drug discovery analysis respectively.

Package details

AuthorFrancesco Napolitano <>
Bioconductor views DifferentialExpression DimensionReduction GO GeneExpression GeneSetEnrichment Pathways
MaintainerFrancesco Napolitano <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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gep2pep documentation built on Nov. 8, 2020, 5:59 p.m.