This function can be used to add single-gene (as opposed to pathway) -based collections. Sets including a single gene don't need to go through normal Kolmogorov-Smirnov statistic computation and are treated differently for performance.
addSingleGeneSets(rp, genes, organism = "Homo Sapiens")
A repository created by
a character vector containing the gene names. For each
og them a single-gene
Character vector used to annotate the created sets. "Homo Sapiens" by default.
Enrichment Scores and p-values for sets including a single gene are
computed with dedicated (fast) routines. Although a statistic based
on a single gene is not efficient per se, it is useful to have data
in the same format as pathway-based profiles.
internally calls single gene dedicated routines whenever a gene set
collection is tagged (see repo function
tag) with "SGE"
("Single Gene Expression"), which is done automatically by
addSingleGeneSets. In that case, the
parameter is ignored.
Nothing, used for side effects.
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