makeCollectionIDs: Creates a collection label for each pathway.
In gep2pep: Creation and Analysis of Pathway Expression Profiles (PEPs)
Description
Usage
Arguments
Value
See Also
Examples
Description
Given a database, uses "category" and "subcategory" entries to
create a vector of collection identifiers. Useful to extract a
collection from a database.
Usage
1
makeCollectionIDs(sets)
Arguments
sets
A pathway database in the same format as output by
importMSigDB.xml.
Value
A vector of identifiers, one per pathway, with the format:
"category_subcategory".
See Also
importMSigDB.xml
Examples
1
2
3
4
5
6
7
8
9
10
db <- loadSamplePWS()
ids <- makeCollectionIDs(db)
unique(ids)
## [1] "c3_TFT" "c3_MIR" "c4_CGN"
db <- db[ids=="c3_MIR"]
length(db)
## [1] 10
gep2pep documentation built on Nov. 8, 2020, 5:59 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
Description
Given a database, uses "category" and "subcategory" entries to create a vector of collection identifiers. Useful to extract a collection from a database.
Usage
1 | makeCollectionIDs(sets)
|
Arguments
sets |
A pathway database in the same format as output by
|
Value
A vector of identifiers, one per pathway, with the format: "category_subcategory".
See Also
importMSigDB.xml
Examples
1 2 3 4 5 6 7 8 9 10 | db <- loadSamplePWS()
ids <- makeCollectionIDs(db)
unique(ids)
## [1] "c3_TFT" "c3_MIR" "c4_CGN"
db <- db[ids=="c3_MIR"]
length(db)
## [1] 10
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.