getDetails: Extracts the details matrix from 'CondSEA' or 'PathSEA'...

Description Usage Arguments Value See Also Examples

View source: R/gep2pep.R

Description

Extracts the details matrix from CondSEA or PathSEA output

Usage

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getDetails(analysis, collection)

Arguments

analysis

The output of either CondSEA or PathSEA.

collection

One of the names returned by getCollections.

Value

A matrix including the ranks of each pathway (over rows) and each condition (over columns) used as input to CondSEA or PathSEA.

See Also

CondSEA, PathSEA

Examples

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db <- loadSamplePWS()
repo_path <- file.path(tempdir(), "gep2pepTemp")

rp <- createRepository(repo_path, db)
geps <- loadSampleGEP()
buildPEPs(rp, geps)

pgset <- c("(+)_chelidonine", "(+/_)_catechin")
psea <- CondSEA(rp, pgset)

getDetails(psea, "c3_TFT")

unlink(repo_path, TRUE)

gep2pep documentation built on Nov. 8, 2020, 5:59 p.m.