exportSEA: Export CondSEA or PathSEA results to XLS format

Description Usage Arguments Value See Also Examples

View source: R/gep2pep.R

Description

The XLS output includes the full CondSEA or PathSEA results, together with additional gene set information for the CondSEA. If the PathSEA or CondSEA analysis was performed with details=TRUE, details will be reported in the XLS file. This function requires the WriteXLS library.

Usage

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exportSEA(rp, results, outname = NULL)

Arguments

rp

A repository created by createRepository.

results

The output of CondSEA or PathSEA.

outname

Name of the XLS file to be created.

Value

Nothing.

See Also

CondSEA, PathSEA

Examples

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db <- loadSamplePWS()
repo_path <- file.path(tempdir(), "gep2pepTemp")

rp <- createRepository(repo_path, db)
geps <- loadSampleGEP()
buildPEPs(rp, geps)

pgset <- c("(+)_chelidonine", "(+/_)_catechin")
psea <- CondSEA(rp, pgset)

## Not run: 
exportSEA(rp, psea)

## End(Not run)

unlink(repo_path, TRUE)

gep2pep documentation built on Nov. 8, 2020, 5:59 p.m.