mdgsa: Multi Dimensional Gene Set Analysis.

Functions to preform a Gene Set Analysis in several genomic dimensions. Including methods for miRNAs.

AuthorDavid Montaner <dmontaner@cipf.es>
Date of publicationNone
MaintainerDavid Montaner <dmontaner@cipf.es>
LicenseGPL
Version1.6.0
https://github.com/dmontaner/mdgsa
http://www.dmontaner.com

View on Bioconductor

Files in this package

mdgsa/DESCRIPTION
mdgsa/NAMESPACE
mdgsa/NEWS.md
mdgsa/R
mdgsa/R/annotFilter.R mdgsa/R/annot_format.R mdgsa/R/getOntology.R mdgsa/R/get_GO_KEGG_names.R mdgsa/R/goLeaves.R mdgsa/R/indexTransform.R mdgsa/R/mdGsa.R mdgsa/R/mdPat.R mdgsa/R/plotMdGsa.R mdgsa/R/propagateGO.R mdgsa/R/pval2index.R mdgsa/R/splitOntologies.R mdgsa/R/transferIndex.R mdgsa/R/uvGsa.R mdgsa/R/uvPat.R mdgsa/R/uvSignif.R
mdgsa/README.md
mdgsa/build
mdgsa/build/vignette.rds
mdgsa/inst
mdgsa/inst/CITATION
mdgsa/inst/doc
mdgsa/inst/doc/mdgsa_vignette.R
mdgsa/inst/doc/mdgsa_vignette.Rmd
mdgsa/inst/doc/mdgsa_vignette.pdf
mdgsa/inst/extdata
mdgsa/inst/extdata/mdGsaPatterns.txt
mdgsa/inst/unitTests
mdgsa/inst/unitTests/test_IndexTransform.R
mdgsa/inst/unitTests/test_annotFilter.R
mdgsa/inst/unitTests/test_annot_format.R
mdgsa/inst/unitTests/test_getOntology.R
mdgsa/inst/unitTests/test_get_GO_KEGG_names.R
mdgsa/inst/unitTests/test_goLeaves.R
mdgsa/inst/unitTests/test_mdGsa.R
mdgsa/inst/unitTests/test_mdPat.R
mdgsa/inst/unitTests/test_propagateGO.R
mdgsa/inst/unitTests/test_pval2index.R
mdgsa/inst/unitTests/test_splitOntologies.R
mdgsa/inst/unitTests/test_transferIndex.R
mdgsa/inst/unitTests/test_uvGsa.R
mdgsa/inst/unitTests/test_uvPat.R
mdgsa/inst/unitTests/test_uvSignif.R
mdgsa/man
mdgsa/man/annotFilter.Rd mdgsa/man/annotList2mat.Rd mdgsa/man/annotMat2list.Rd mdgsa/man/getGOnames.Rd mdgsa/man/getKEGGnames.Rd mdgsa/man/getOntology.Rd mdgsa/man/goLeaves.Rd mdgsa/man/indexTransform.Rd mdgsa/man/mdGsa.Rd mdgsa/man/mdPat.Rd mdgsa/man/plotMdGsa.Rd mdgsa/man/propagateGO.Rd mdgsa/man/pval2index.Rd mdgsa/man/revList.Rd mdgsa/man/splitOntologies.Rd mdgsa/man/transferIndex.Rd mdgsa/man/uvGsa.Rd mdgsa/man/uvPat.Rd mdgsa/man/uvSignif.Rd
mdgsa/tests
mdgsa/tests/runTests.R
mdgsa/vignettes
mdgsa/vignettes/mdgsa_vignette.Rmd

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