annotList2mat: Convert an annotation list into an annotation matrix.

In mdgsa: Multi Dimensional Gene Set Analysis.

Description

Converts an annotation list to an annotation matrix. The annotation matrix should have 2 columns, the first one with the gene ids; the second one with the annotation ids.

Usage

annotList2mat(lis, tag = "listPos")

Arguments

lis	annotation list.
tag	substitutes missing list names if any.

Details

Each element of the annotation list represents a functional block; it is a character vector containing the gene ids annotated under the function. The names of the list are the annotation ids.

Value

An annotation matrix: the first column contains the gene or feature ids, the second column contains the Gene Set or functional block ids.

Author(s)

David Montaner [e-mail]

See Also

annotMat2list, revList, split

Examples

lis <- list (Block1 = c("gen1", "gen2"), Block2 = c("gen3"))
annotList2mat (lis)

mdgsa documentation built on Nov. 8, 2020, 5:05 p.m.