getGOnames: Get Gene Ontology names

In mdgsa: Multi Dimensional Gene Set Analysis.

Description

Finds the GO name form GO id.

Usage

getGOnames(x, verbose = TRUE)

Arguments

x	a character vector of GO ids.
verbose	verbose.

Details

Uses the library GO.db.

x may be a data.frame. In such case, GO ids are expected in its row names.

Value

A character vector with the corresponding GO names.

Author(s)

David Montaner [e-mail]

See Also

propagateGO, goLeaves, splitOntologies, getKEGGnames, getOntology

Examples

getGOnames (c("GO:0000018", "GO:0000038", "BAD_GO"))

Example output

KEGG.db contains mappings based on older data because the original
  resource was removed from the the public domain before the most
  recent update was produced. This package should now be considered
  deprecated and future versions of Bioconductor may not have it
  available.  Users who want more current data are encouraged to look
  at the KEGGREST or reactome.db packages

Using GO.db version: 3.4.1
                                    GO:0000018 
             "regulation of DNA recombination" 
                                    GO:0000038 
"very long-chain fatty acid metabolic process" 
                                          <NA> 
                                            NA 
Warning message:
In getGOnames(c("GO:0000018", "GO:0000038", "BAD_GO")) :
  1 GOids where not found; missing names generated.

mdgsa documentation built on Nov. 8, 2020, 5:05 p.m.