martaint/InterCellar: InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication in single-cell transcriptomics

InterCellar is implemented as an R/Bioconductor Package containing a Shiny app that allows users to interactively analyze cell-cell communication from scRNA-seq data. Starting from precomputed ligand-receptor interactions, InterCellar provides filtering options, annotations and multiple visualizations to explore clusters, genes and functions. Finally, the user can define interaction-pairs modules and link them to significant functional terms from Pathways or Gene Ontology.

Getting started

Package details

Bioconductor views GO SingleCell Software Transcriptomics Visualization
Maintainer
LicenseMIT + file LICENSE
Version1.1.0
URL https://github.com/martaint/InterCellar
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("martaint/InterCellar")
martaint/InterCellar documentation built on June 10, 2021, 10:35 p.m.