input.data: Input Data example

In martaint/InterCellar: InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication in single-cell transcriptomics

Input Data example

Description

A dataset obtained from Tirosh et al melanoma dataset, running CellPhoneDBv2. This data is generated by InterCellar running read.CPDBv2()

Usage

input.data

Format

A data frame with 5638 rows and 11 variables:

int_pair

interaction pair name, geneA & geneB

geneA

name, hgnc_symbol

geneB

name, hgnc_symbol

typeA

molecular type of geneA, either L (ligand) or R (receptor)

typeB

molecular type of geneB, either L (ligand) or R (receptor)

clustA

name of first cluster, either character or number

clustB

name of second cluster, either character or number

score

int-pair score as avg expression of geneA and geneB over clustA and clustB, decimal

p_value

int-pair pvalue, decimal

annotation_strategy

database from which the int-pair was retrieved

int.type

either autocrine or paracrine

martaint/InterCellar documentation built on April 7, 2022, 11:44 a.m.