rols: An R interface to the Ontology Lookup Service

An interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.

AuthorLaurent Gatto <lg390@cam.ac.uk>, with contributions from Tiago Chedraoui Silva.
Date of publicationNone
MaintainerLaurent Gatto <lg390@cam.ac.uk>
LicenseGPL-2
Version2.2.5
http://lgatto.github.com/rols/

View on Bioconductor

Functions

all.equal,Ontologies,Ontologies-method Man page
all.equal,Ontology,Ontology-method Man page
all.equal,Terms,Terms-method Man page
all.equal,Term,Term-method Man page
allRows Man page
ancestors Man page
as.character.CVParam Man page
as.CVParam.character Man page
charIsCVParam Man page
children Man page
class:OlsSearch Man page
class:Ontologies Man page
class:Ontology Man page
class:Properties Man page
class:Property Man page
class:Term Man page
class:Terms Man page
coerce,character,CVParam-method Man page
coerce,CVParam,character-method Man page
coerce,OlsSearch,data.frame-method Man page
coerce,OlsSearch,Terms-method Man page
coerce,Ontologies,data.frame-method Man page
coerce,Ontologies,list-method Man page
CVParam Man page
CVParam-class Man page
derivesFrom Man page
descendants Man page
isObsolete Man page
isObsolete,Term-method Man page
isObsolete,Terms-method Man page
isRoot Man page
isRoot,Term-method Man page
isRoot,Terms-method Man page
lapply,Ontologies-method Man page
lapply,Terms-method Man page
length,Ontologies-method Man page
length,Properties-method Man page
length,Terms-method Man page
olsDesc Man page
olsDesc,character-method Man page
olsDesc,Ontologies-method Man page
olsDesc,Ontology-method Man page
olsLoaded Man page
olsLoaded,character-method Man page
olsLoaded,Ontologies-method Man page
olsLoaded,Ontology-method Man page
olsNamespace Man page
olsNamespace,character-method Man page
olsNamespace,Ontologies-method Man page
olsNamespace,Ontology-method Man page
olsPrefix Man page
olsPrefix,character-method Man page
olsPrefix,Ontologies-method Man page
olsPrefix,Ontology-method Man page
olsRoot Man page
olsRoot,character-method Man page
olsRoot,Ontologies-method Man page
olsRoot,Ontology-method Man page
olsRows Man page
olsRows<- Man page
olsSearch Man page
OlsSearch Man page
OlsSearch-class Man page
olsStatus Man page
olsStatus,character-method Man page
olsStatus,Ontologies-method Man page
olsStatus,Ontology-method Man page
olsTitle Man page
olsTitle,character-method Man page
olsTitle,Ontologies-method Man page
olsTitle,Ontology-method Man page
olsUpdated Man page
olsUpdated,character-method Man page
olsUpdated,Ontologies-method Man page
olsUpdated,Ontology-method Man page
olsVersion Man page
olsVersion,character-method Man page
olsVersion,Ontologies-method Man page
olsVersion,Ontology-method Man page
Ontologies Man page
Ontologies-class Man page
[,Ontologies-method Man page
[[,Ontologies-method Man page
Ontologies,missing-method Man page
Ontologies,numeric-method Man page
Ontology Man page
Ontology,character-method Man page
Ontology-class Man page
Ontology,Ontology-method Man page
parents Man page
partOf Man page
properties Man page
Properties Man page
properties,character-method Man page
Properties-class Man page
properties,Ontology-method Man page
properties,Term-method Man page
properties,Terms-method Man page
Property Man page
Property-class Man page
rep,CVParam-method Man page
show,CVParam-method Man page
show,OlsSearch-method Man page
show,Ontologies-method Man page
show,Ontology-method Man page
show,Properties-method Man page
show,Property-method Man page
show,Term-method Man page
show,Terms-method Man page
term Man page
Term Man page
term,character,character-method Man page
Term-class Man page
termDesc Man page
termDesc,Term-method Man page
termDesc,Terms-method Man page
termId Man page
termId,Term-method Man page
termId,Terms-method Man page
termLabel Man page
termLabel,Term-method Man page
termLabel,Terms-method Man page
termNamespace Man page
termNamespace,Term-method Man page
termNamespace,Terms-method Man page
termOntology Man page
term,Ontology,character-method Man page
termOntology,Term-method Man page
termOntology,Terms-method Man page
termPrefix Man page
termPrefix,Term-method Man page
termPrefix,Terms-method Man page
terms Man page
Terms Man page
terms,character-method Man page
Terms-class Man page
[,Terms-method Man page
[[,Terms-method Man page
terms,Ontology-method Man page
termSynonym Man page
termSynonym,Term-method Man page
termSynonym,Terms-method Man page
unique,Terms-method Man page

Files

rols/DESCRIPTION
rols/NAMESPACE
rols/NEWS
rols/R
rols/R/AllClasses.R rols/R/AllGenerics.R rols/R/cvparam.R rols/R/methods-OlsSearch.R rols/R/methods-Ontologies.R rols/R/methods-Properties.R rols/R/methods-Terms.R rols/R/utils.R rols/R/zzz.R
rols/build
rols/build/vignette.rds
rols/inst
rols/inst/doc
rols/inst/doc/rols.R
rols/inst/doc/rols.Rmd
rols/inst/doc/rols.html
rols/inst/scripts
rols/inst/scripts/misc.R
rols/man
rols/man/CVParam-class.Rd rols/man/OlsSearch-class.Rd rols/man/Ontology-class.Rd rols/man/Properties-class.Rd rols/man/Term-class.Rd
rols/tests
rols/tests/testthat
rols/tests/testthat.R
rols/tests/testthat/test_CVParam.R
rols/tests/testthat/test_OlsSearch.R
rols/tests/testthat/test_Onologies.R
rols/tests/testthat/test_Properties.R
rols/tests/testthat/test_Terms.R
rols/tests/testthat/test_queries.R
rols/tests/testthat/test_utils.R
rols/vignettes
rols/vignettes/rols.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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