rols: An R interface to the Ontology Lookup Service

An interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("rols")
AuthorLaurent Gatto <lg390@cam.ac.uk>, with contributions from Tiago Chedraoui Silva.
Bioconductor views Annotation GO MassSpectrometry Software
Date of publicationNone
MaintainerLaurent Gatto <lg390@cam.ac.uk>
LicenseGPL-2
Version2.4.0
http://lgatto.github.com/rols/

View on Bioconductor

Functions

all.equal,Ontologies,Ontologies-method Man page
all.equal,Ontology,Ontology-method Man page
all.equal,Terms,Terms-method Man page
all.equal,Term,Term-method Man page
allRows Man page
ancestors Man page
as.character.CVParam Man page
as.CVParam.character Man page
charIsCVParam Man page
children Man page
class:OlsSearch Man page
class:Ontologies Man page
class:Ontology Man page
class:Properties Man page
class:Property Man page
class:Term Man page
class:Terms Man page
coerce,character,CVParam-method Man page
coerce,CVParam,character-method Man page
coerce,OlsSearch,data.frame-method Man page
coerce,OlsSearch,Terms-method Man page
coerce,Ontologies,data.frame-method Man page
coerce,Ontologies,list-method Man page
CVParam Man page
CVParam-class Man page
derivesFrom Man page
descendants Man page
isObsolete Man page
isObsolete,Term-method Man page
isObsolete,Terms-method Man page
isRoot Man page
isRoot,Term-method Man page
isRoot,Terms-method Man page
lapply,Ontologies-method Man page
lapply,Terms-method Man page
length,Ontologies-method Man page
length,Properties-method Man page
length,Terms-method Man page
olsDesc Man page
olsDesc,character-method Man page
olsDesc,Ontologies-method Man page
olsDesc,Ontology-method Man page
olsLoaded Man page
olsLoaded,character-method Man page
olsLoaded,Ontologies-method Man page
olsLoaded,Ontology-method Man page
olsNamespace Man page
olsNamespace,character-method Man page
olsNamespace,Ontologies-method Man page
olsNamespace,Ontology-method Man page
olsPrefix Man page
olsPrefix,character-method Man page
olsPrefix,Ontologies-method Man page
olsPrefix,Ontology-method Man page
olsRoot Man page
olsRoot,character-method Man page
olsRoot,Ontologies-method Man page
olsRoot,Ontology-method Man page
olsRows Man page
olsRows<- Man page
olsSearch Man page
OlsSearch Man page
OlsSearch-class Man page
olsStatus Man page
olsStatus,character-method Man page
olsStatus,Ontologies-method Man page
olsStatus,Ontology-method Man page
olsTitle Man page
olsTitle,character-method Man page
olsTitle,Ontologies-method Man page
olsTitle,Ontology-method Man page
olsUpdated Man page
olsUpdated,character-method Man page
olsUpdated,Ontologies-method Man page
olsUpdated,Ontology-method Man page
olsVersion Man page
olsVersion,character-method Man page
olsVersion,Ontologies-method Man page
olsVersion,Ontology-method Man page
Ontologies Man page
Ontologies-class Man page
[,Ontologies-method Man page
[[,Ontologies-method Man page
Ontologies,missing-method Man page
Ontologies,numeric-method Man page
Ontology Man page
Ontology,character-method Man page
Ontology-class Man page
Ontology,Ontology-method Man page
parents Man page
partOf Man page
properties Man page
Properties Man page
properties,character-method Man page
Properties-class Man page
properties,Ontology-method Man page
properties,Term-method Man page
properties,Terms-method Man page
Property Man page
Property-class Man page
rep,CVParam-method Man page
show,CVParam-method Man page
show,OlsSearch-method Man page
show,Ontologies-method Man page
show,Ontology-method Man page
show,Properties-method Man page
show,Property-method Man page
show,Term-method Man page
show,Terms-method Man page
term Man page
Term Man page
term,character,character-method Man page
Term-class Man page
termDesc Man page
termDesc,Term-method Man page
termDesc,Terms-method Man page
termId Man page
termId,Term-method Man page
termId,Terms-method Man page
termLabel Man page
termLabel,Term-method Man page
termLabel,Terms-method Man page
termNamespace Man page
termNamespace,Term-method Man page
termNamespace,Terms-method Man page
termOntology Man page
term,Ontology,character-method Man page
termOntology,Term-method Man page
termOntology,Terms-method Man page
termPrefix Man page
termPrefix,Term-method Man page
termPrefix,Terms-method Man page
terms Man page
Terms Man page
terms,character-method Man page
Terms-class Man page
[,Terms-method Man page
[[,Terms-method Man page
terms,Ontology-method Man page
termSynonym Man page
termSynonym,Term-method Man page
termSynonym,Terms-method Man page
unique,Terms-method Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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