gostres_macrophage: A sample output from g:Profiler
In federicomarini/GeneTonic: Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
gostres_macrophage R Documentation
A sample output from g:Profiler
Description
A sample output object as created from a call to g:Profiler, with the interface
provided by gprofiler2 - using the gost() function
Details
This object has been created on the data from the macrophage package
by analyzing downstream the differentially expressed genes
when comparing IFNg treated samples vs naive samples, accounting
for the different cell lines included.
Details on how this object has been created are included in the create_gt_data.R
script, included in the scripts folder of the GeneTonic package.
References
Alasoo, et al. "Shared genetic effects on chromatin and gene
expression indicate a role for enhancer priming in immune response",
Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.
See Also
Other pathway-analysis-results:
enrichr_output_macrophage,
topgoDE_macrophage_IFNg_vs_naive
federicomarini/GeneTonic documentation built on Oct. 10, 2024, 8:49 p.m.
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| gostres_macrophage | R Documentation |
A sample output from g:Profiler
Description
A sample output object as created from a call to g:Profiler, with the interface
provided by gprofiler2 - using the gost() function
Details
This object has been created on the data from the macrophage package
by analyzing downstream the differentially expressed genes
when comparing IFNg treated samples vs naive samples, accounting
for the different cell lines included.
Details on how this object has been created are included in the create_gt_data.R
script, included in the scripts folder of the GeneTonic package.
References
Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.
See Also
Other pathway-analysis-results:
enrichr_output_macrophage,
topgoDE_macrophage_IFNg_vs_naive
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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