vivekbhr/icetea: Integrating Cap Enrichment with Transcript Expression Analysis

icetea (Integrating Cap Enrichment with Transcript Expression Analysis) provides functions for end-to-end analysis of multiple 5'-profiling methods such as CAGE, RAMPAGE and MAPCap, beginning from raw reads to detection of transcription start sites using replicates. It also allows performing differential TSS detection between group of samples, therefore, integrating the mRNA cap enrichment information with transcript expression analysis.

Getting started

Package details

Bioconductor views DifferentialExpression GeneExpression RNASeq Sequencing Transcription Transcriptomics
Maintainer
LicenseGPL-3 + file LICENSE
Version0.99.10
URL https://github.com/vivekbhr/icetea
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("vivekbhr/icetea")
vivekbhr/icetea documentation built on June 1, 2018, 5:36 a.m.