strandBinCounts: Perform stranded Bin counts

Description Usage Arguments Value

View source: R/detectTSS.R

Description

Perform stranded Bin counts

Usage

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strandBinCounts(
  bam.files,
  restrictChrs,
  bam_param,
  bp_param,
  window_size,
  sliding = FALSE,
  func
)

Arguments

bam.files

character vector. BAM files to use

restrictChrs

character vector. chromosomes to use

bam_param

ScanBAMParams

bp_param

BPPARAM

window_size

integer. size of window to use

sliding

logical. perform sliding window counts?

func

function to preprocess reads

Value

RangedSE object with forward and reverse strand counts


vivekbhr/icetea documentation built on June 8, 2020, 4:45 a.m.