exportTSS: Export the detected TSS from CapSet object as .bed files

Description Usage Arguments Value Examples

Description

Export the detected TSS from CapSet object as .bed files

Usage

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exportTSS(CSobject, outfile_prefix, pergroup = FALSE, merged = TRUE)

## S4 method for signature 'CapSet'
exportTSS(CSobject, outfile_prefix, pergroup = FALSE, merged = TRUE)

Arguments

CSobject

The modified CapSet object after running detectTSS function

outfile_prefix

Prefix (with path) for output .bed files

pergroup

If TRUE, write output per group of samples

merged

If TRUE, write merged bed file (union of all groups)

Value

.bed file(s) containing detected TSS.

Examples

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# load a previously saved CapSet object
cs <- exampleCSobject()
# export tss
exportTSS(cs, merged = TRUE, outfile_prefix = "testTSS")

vivekbhr/icetea documentation built on June 8, 2020, 4:45 a.m.