API for vivekbhr/icetea
Integrating Cap Enrichment with Transcript Expression Analysis

Global functions
CapSet Man page
CapSet-class Man page
ResizeReads Man page Source code
activeChrs Man page Source code
annotateTSS Man page Source code
check_capSet Man page Source code
demultiplexFASTQ Man page
demultiplexFASTQ,CapSet-method Man page
detectDiffTSS Man page
detectDiffTSS,DESeqDataSet-method Man page
detectDiffTSS,DGEGLM-method Man page
detectTSS Man page
detectTSS,CapSet-method Man page
diffQCplots Man page Source code
exampleCSobject Man page Source code
exportTSS Man page
exportTSS,CapSet-method Man page
filterDuplicates Man page
filterDuplicates,CapSet-method Man page
filterDups Man page Source code
filterdups_func Source code
fitDiffTSS Man page
fitDiffTSS,CapSet-method Man page
getBamFlags Man page Source code
getChromBins Man page Source code
getChromWindows Man page Source code
getGeneCounts Man page
getGeneCounts,CapSet-method Man page
getMCparams Man page Source code
getNormFactors Man page
getNormFactors,CapSet-method Man page
get_newfastq Man page Source code
get_stackedNum Source code
getranks Man page Source code
localFilter Source code
mapCaps Man page
mapCaps,CapSet-method Man page
newCapSet Man page Source code
numReadsInBed Man page Source code
plotCompBias Source code
plotPrecision Man page Source code
plotReadStats Man page
plotReadStats,CapSet-method Man page
plotTSSprecision Man page
plotTSSprecision,GRanges,CapSet-method Man page
plotTSSprecision,GRanges,character-method Man page
sampleInfo Man page
sampleInfo,CapSet-method Man page
sampleInfo<- Man page
sampleInfo<-,CapSet-method Man page
splitBAM_byIndex Man page Source code
splitBAM_byRepindex Man page Source code
split_fastq Man page Source code
splitranks Man page Source code
strandBinCounts Man page Source code
vivekbhr/icetea documentation built on May 26, 2019, 5:35 a.m.