getChromWindows: Get chromosome sliding windows from BAM files
In vivekbhr/icetea: Integrating Cap Enrichment with Transcript Expression Analysis
Description
Usage
Arguments
Value
Description
Get chromosome sliding windows from BAM files
Usage
1
getChromWindows(bamFiles, restrictChr = NULL, binSize, stepSize)
Arguments
bamFiles
Character vector (bam files)
restrictChr
Chromosomes to select
binSize
Size of bins
stepSize
Size of window slide
Value
GRanges (sliding windows) for both strands
vivekbhr/icetea documentation built on June 8, 2020, 4:45 a.m.
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Description Usage Arguments Value
Description
Get chromosome sliding windows from BAM files
Usage
1 | getChromWindows(bamFiles, restrictChr = NULL, binSize, stepSize)
|
Arguments
bamFiles |
Character vector (bam files) |
restrictChr |
Chromosomes to select |
binSize |
Size of bins |
stepSize |
Size of window slide |
Value
GRanges (sliding windows) for both strands
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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