filterDups: Filter PCR-duplicates from BAM file using internal UMIs
In vivekbhr/icetea: Integrating Cap Enrichment with Transcript Expression Analysis
Description
Usage
Arguments
Value
View source: R/filterDuplicates.R
Description
Filter PCR-duplicates from BAM file using internal UMIs
Usage
1
filterDups(bamFile, outFile, keepPairs)
Arguments
bamFile
character. Input BAM file
outFile
character. Output (filtered) BAM file
keepPairs
logical. Keep R2 read?
Value
Filtered BAM file, after PCR duplicate removal
vivekbhr/icetea documentation built on June 8, 2020, 4:45 a.m.
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Description Usage Arguments Value
View source: R/filterDuplicates.R
Description
Filter PCR-duplicates from BAM file using internal UMIs
Usage
1 | filterDups(bamFile, outFile, keepPairs)
|
Arguments
bamFile |
character. Input BAM file |
outFile |
character. Output (filtered) BAM file |
keepPairs |
logical. Keep R2 read? |
Value
Filtered BAM file, after PCR duplicate removal
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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