InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data

Alternative polyadenylation (APA) is one of the important post-transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites due to internal-priming.

Package details

AuthorJianhong Ou, Sungmi M. Park, Michael R. Green and Lihua Julie Zhu
Bioconductor views AlternativeSplicing Coverage DifferentialSplicing GeneRegulation ImmunoOncology RNASeq Sequencing Transcription
MaintainerJianhong Ou <>, Lihua Julie Zhu <>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the InPAS package in your browser

Any scripts or data that you put into this service are public.

InPAS documentation built on Nov. 8, 2020, 5:03 p.m.