UTR3usage: calculate the usage of long and short form of UTR3
In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data
Description
Usage
Arguments
Value
Author(s)
See Also
Description
calculate the usage of long and short form of UTR3 for the results of CPsites
Usage
1
Arguments
CPsites
outputs of CPsites
coverage
coverage for each sample, outputs of
coverageFromBedGraph
hugeData
is this dataset consume too much memory?
if it is TRUE, the coverage will be saved into tempfiles.
BPPARAM
An optional BiocParallelParam
instance determining the parallel back-end to be used during
evaluation, or a list of BiocParallelParam instances, to be applied
in sequence for nested calls to bplapply.
phmm
prepare data for singleSample analysis? default is FALSE
Value
GRanges object
Author(s)
Jianhong Ou
See Also
InPAS documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
calculate the usage of long and short form of UTR3 for the results of CPsites
Usage
1 |
Arguments
CPsites |
outputs of CPsites |
coverage |
coverage for each sample, outputs of coverageFromBedGraph |
hugeData |
is this dataset consume too much memory? if it is TRUE, the coverage will be saved into tempfiles. |
BPPARAM |
An optional |
phmm |
prepare data for singleSample analysis? default is FALSE |
Value
GRanges object
Author(s)
Jianhong Ou
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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