Description Usage Format Details Value Examples
3'UTR annotation obtained from utr3Annotation by TxDb.Drerio.UCSC.danRer10.refGene and org.Dr.eg.db
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GRanges with slot start holding the start position of the 3'UTR, slot end holding the end position of the 3'UTR, slot names holding transcripts and gene names of 3'UTR, slot seqnames holding the chromosome location where the 3'UTR is located and slot strand for strand of 3'UTR. In addition, the following variables are included.
feature
should be unknown or proximalCP_XXXXXXXX
id
should be utr3 or next.exon.gap
exon
exon id
transcript
trnscript id
gene
entriz gene id
symbol
gene symbol
used in the examples Annotation data obtained by: library(TxDb.Drerio.UCSC.danRer10.refGene)
library(org.Dr.eg.db)
utr3Annotation(TxDb.Drerio.UCSC.danRer10.refGene, "org.Dr.egSYMBOL")
an object of GRanges.
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