polishCPs: polish the searching results of CP sites
In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data
Description
Usage
Arguments
Value
Author(s)
See Also
Description
remove the multiple positions of CP sites for same 3UTRs and only keep the best
CP sites for proximal and distal.
Usage
1
polishCPs(CPs)
Arguments
CPs
output of searchProximalCPs or proximalAdj
Value
a matrix with columes: "fit_value", "Predicted_Proximal_APA",
"Predicted_Distal_APA", "utr3start", "utr3end", "type"
Author(s)
Jianhong Ou
See Also
CPsite_estimation, searchProximalCPs,
proximalAdj,
proximalAdjByPWM, proximalAdjByCleanUpdTSeq,
PAscore,PAscore2
InPAS documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
remove the multiple positions of CP sites for same 3UTRs and only keep the best CP sites for proximal and distal.
Usage
1 | polishCPs(CPs)
|
Arguments
CPs |
output of searchProximalCPs or proximalAdj |
Value
a matrix with columes: "fit_value", "Predicted_Proximal_APA", "Predicted_Distal_APA", "utr3start", "utr3end", "type"
Author(s)
Jianhong Ou
See Also
CPsite_estimation, searchProximalCPs,
proximalAdj,
proximalAdjByPWM, proximalAdjByCleanUpdTSeq,
PAscore,PAscore2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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