PAscore: calculate the CP score
In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data
Description
Usage
Arguments
Value
Author(s)
See Also
Description
calculate the CP score by PWM
Usage
1
Arguments
seqname
sequence names
pos
genomic positions
str
strands
idx
offset postion
PWM
polyA position weight matrix
genome
an object of BSgenome
ups
upstream base
dws
downstream base
Value
idx list after filter
Author(s)
Jianhong Ou
See Also
InPAS documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
calculate the CP score by PWM
Usage
1 |
Arguments
seqname |
sequence names |
pos |
genomic positions |
str |
strands |
idx |
offset postion |
PWM |
polyA position weight matrix |
genome |
an object of BSgenome |
ups |
upstream base |
dws |
downstream base |
Value
idx list after filter
Author(s)
Jianhong Ou
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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