get.regions.coverage: claculate coverage for giving region
In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data
Description
Usage
Arguments
Value
Author(s)
View source: R/get.regions.coverage.R
Description
claculate coverage for giving region
Usage
1
2
get.regions.coverage(chr, utr3.regions.chr,
hugeData, coverage, phmm=FALSE)
Arguments
chr
chromosome
utr3.regions.chr
the GRanges of region to be extracted
hugeData
is it a huge dataset?
coverage
output of coverageFromBedGraph
phmm
prepare data for singleSample analysis?
Value
GRanges with coverage data
Author(s)
Jianhong Ou
InPAS documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value Author(s)
View source: R/get.regions.coverage.R
Description
claculate coverage for giving region
Usage
1 2 | get.regions.coverage(chr, utr3.regions.chr,
hugeData, coverage, phmm=FALSE)
|
Arguments
chr |
chromosome |
utr3.regions.chr |
the GRanges of region to be extracted |
hugeData |
is it a huge dataset? |
coverage |
output of coverageFromBedGraph |
phmm |
prepare data for singleSample analysis? |
Value
GRanges with coverage data
Author(s)
Jianhong Ou
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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