MBASED: Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.

Getting started

Package details

AuthorOleg Mayba, Houston Gilbert
Bioconductor views GeneExpression Sequencing Transcription
MaintainerOleg Mayba <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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MBASED documentation built on Nov. 8, 2020, 5:53 p.m.