chromswitch: An R package to detect chromatin state switches from epigenomic data

Chromswitch implements a flexible method to detect chromatin state switches between samples in two biological conditions in a specific genomic region of interest given peaks or chromatin state calls from ChIP-seq data.

Package details

AuthorSelin Jessa [aut, cre], Claudia L. Kleinman [aut]
Bioconductor views Clustering DifferentialPeakCalling Epigenetics FunctionalGenomics GeneExpression HistoneModification MultipleComparison Transcription
MaintainerSelin Jessa <[email protected]>
LicenseMIT + file LICENSE
Version1.4.0
URL https://github.com/sjessa/chromswitch
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("chromswitch")

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chromswitch documentation built on Nov. 1, 2018, 2:26 a.m.