conditionalClusterEntropy: clusterEntropyGivenClasses
In chromswitch: An R package to detect chromatin state switches from epigenomic data
Description
Usage
Arguments
Value
Examples
View source: R/external_cluster_validity.R
Description
Computes the conditional entropy of a set of clusters, given the
true classes, as defined in
https://aclweb.org/anthology/D/D07/D07-1043.pdf
Usage
1
conditionalClusterEntropy(contingency, c, k)
Arguments
contingency
Table, contingency table between clusters and
conditions as returned by the table function
c
Vector of classes
k
Vector of clusters
Value
Numeric
Examples
1
2
3
4
clusters <- c(0, 0, 2, 1, 1, 0, 1)
classes <- c("A", "A", "A", "B", "B", "A", "B")
ct <- table(classes, clusters)
conditionalClusterEntropy(contingency = ct)
chromswitch documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Examples
View source: R/external_cluster_validity.R
Description
Computes the conditional entropy of a set of clusters, given the true classes, as defined in https://aclweb.org/anthology/D/D07/D07-1043.pdf
Usage
1 | conditionalClusterEntropy(contingency, c, k)
|
Arguments
contingency |
Table, contingency table between clusters and
conditions as returned by the |
c |
Vector of classes |
k |
Vector of clusters |
Value
Numeric
Examples
1 2 3 4 | clusters <- c(0, 0, 2, 1, 1, 0, 1)
classes <- c("A", "A", "A", "B", "B", "A", "B")
ct <- table(classes, clusters)
conditionalClusterEntropy(contingency = ct)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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