pReciprocalOverlap: pReciprocalOverlap

In chromswitch: An R package to detect chromatin state switches from epigenomic data

Description

If a and b denote two genomic regions, check whether they overlap reciprocally by p*100

Usage

pReciprocalOverlap(a, b, p)

Arguments

a	GRanges object storing first region
b	GRanges object storing second region
p	Numeric value in [0, 1] giving the fraction of reciprocal overlap to require.

Value

Logical value, TRUE if a and b are the same by having a p-reciprocal overlap, FALSE otherwise

Examples

a <- GRanges(seqnames = "chr11",
             ranges = IRanges(start = 112829468, end = 112834468))
b <- GRanges(seqnames = "chr11",
             ranges = IRanges(start = 112829468, end = 113834468))

pReciprocalOverlap(a, b, 0.9)

chromswitch documentation built on Nov. 8, 2020, 5:24 p.m.