casper: Characterization of Alternative Splicing based on Paired-End Reads

Infer alternative splicing from paired-end RNA-seq data. The model is based on counting paths across exons, rather than pairwise exon connections, and estimates the fragment size and start distributions non-parametrically, which improves estimation precision.

Package details

AuthorDavid Rossell, Camille Stephan-Otto, Manuel Kroiss, Miranda Stobbe, Victor Pena
Bioconductor views DifferentialExpression GeneExpression RNASeq Sequencing Transcription
MaintainerDavid Rossell <ros[email protected]>
LicenseGPL (>=2)
Package repositoryView on Bioconductor
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casper documentation built on Nov. 1, 2018, 5:04 a.m.