denovoGeneExpr-class: Class "denovoGenomeExpr"

In casper: Characterization of Alternative Splicing based on Paired-End Reads

Description

denovoGeneExpr stores inferred expression for de novo splicing variants for a single gene. denovoGenomeExpr stores the information for several genes (typically, the whole genome).

Objects from the Class

Objects are returned by calcDenovo.

Slots

islands

A list of denovoGeneExpr objects, with each element containing results for an individual gene.

Methods

show

signature(object = "denovoGenomeExpr"): Displays general information about the object.

as.list

Coerces the object to a list

"["

Selects a subset of genes

"[["

Selects a single gene

Author(s)

Camille Stephan-Otto Attolini

See Also

procGenome and createDenovoGenome to create denovoGenomeExpr objects.

Examples

showClass("denovoGeneExpr")
showClass("denovoGenomeExpr")

casper documentation built on Dec. 17, 2020, 2:01 a.m.