simulatedSamples-class: Class "simulatedSamples"
In casper: Characterization of Alternative Splicing based on Paired-End Reads

Description Objects from the Class Slots Methods Author(s) See Also Examples

simulatedSamples stores multiple simulated isoform expression datasets. Each dataset contains the (simulation) true mean expression in each group and residual variance, as well as the estimated expression in each individual sample.

Objects are returned by simMultSamples.

The class extends a list directly.

.Data: A list, each element containing a different simulated dataset

show: signature(object = "simulatedSamples"): Displays general information about the object.
coef: signature(object = "simulatedSamples"): Returns a matrix with difference between group means (simulation truth) in all simulated datasets
exprs: signature(object = "simulatedSamples"): Returns a list of ExpressionSets containing the estimated expressions in each simulation.
mergeBatches: signature(x="ExpressionSet",y="simulatedSamples"): Combines x with each element in exprs in y, and returns a list. See help(mergeBatches) for more details.
"[": x[i] selects a subset of simulations, x[,j] a subset of the samples in each simulation