modelPriorAS-class: Class "modelPriorAS"

In casper: Characterization of Alternative Splicing based on Paired-End Reads

Description

modelPriorAS stores parameters for the prior distribution on all possible alternative splicing configuration (i.e. prior on model space). This information is used for de novo reconstruction of splicing variants.

Objects from the Class

Objects are created by function modelPrior.

Slots

nvarPrior

Prior on the number of variants per gene. A list with components "nbpar" containing the parameters of the Negative Binomial distribution, "obs" containing the observed counts and "pred" the Negative Binomial predicted counts.

nexonPrior

Prior on the number of exons in an expressed variant. A list with components "bbpar" containing Beta-Binomial parameters, "obs" containing the observed counts and "pred" the Beta-Binomial predicted counts.

Methods

show

signature(object = "modelPriorAS"): Displays general information about the object.

"["

Selects prior parameters for genes with the specified number of exons

coef

Selects a single gene

Author(s)

David Rossell

See Also

procGenome and createDenovoGenome to create modelPriorAS objects.

Examples

showClass("modelPriorAS")

casper documentation built on Dec. 17, 2020, 2:01 a.m.