Files in casper

Characterization of Alternative Splicing based on Paired-End Reads

NAMESPACE

DESCRIPTION

src/cstat.h

src/fragment.cpp

src/header.h

src/dropVariant.cpp

src/dataframe.h

src/dataframe.cpp

src/simReadsfunc.c

src/variant.cpp

src/uniqQname.c

src/cstat.cpp

src/fragFunc.h

src/functions.h

src/fragFunc.c

src/makeIslands.c

src/stdafx.h

src/model.cpp

src/cppmemory.h

src/casper.cpp

src/smartmodeldist.cpp

src/discretedf.h

src/seppel.h

src/dropVariant.h

src/fragment.h

src/variant.h

src/functions.c

src/model_cmp.cpp

src/seppel.cpp

src/join_exons.c

src/rcasper.cpp

src/exon.h

src/discretedf.cpp

src/casper.h

src/hash.c

src/model.h

src/exon.cpp

src/simReadsfunc.h

src/rcasper.h

src/model_cmp.h

src/pathCounts.c

src/hash.h

src/procBam.c

src/variant_cmp.cpp

src/variant_cmp.h

src/targetver.h

src/simReads.c

R/procGenome.R R/truncnorm.R R/createDenovoGenome.R R/simReads.R R/getDistrs.R R/calcDenovo.R R/rmShortInserts.R R/wrapKnown.R R/casperVignettes.R R/qqnormGenomeWide.R R/wrapDenovo.R R/relexprByGene.R R/simMultSamples.R R/procBam.R R/genePlot.R R/mergeExp.R R/mergeBatches.R R/asymmetryCheck.R R/ClassDefinitions.R R/makeTranscriptDbFromGFF.R R/modelPrior.R R/checks.R R/simPost.R R/getRoc.R R/pathCounts.R R/calcExp.R R/probNonEquiv.R R/GenericDefs.R R/splitGenomeByLength.R R/denovoExpr.R man/getRoc.Rd man/getNreads.Rd man/procBam.Rd man/subsetGenome.Rd man/denovoGenomeExpr-class.Rd man/splitGenomeByLength.Rd man/plot-methods.Rd man/qqnormGenomeWide.Rd man/simMAEcheck.Rd man/distrsGSE37704.Rd man/simMAE.Rd man/denovoExpr.Rd man/asymmetryCheck.Rd man/transcripts.Rd man/pathCounts-class.Rd man/hg19DB.Rd man/relexprByGene.Rd man/probNonEquiv.Rd man/rmShortInserts.Rd man/genePlot.Rd man/wrapKnown.Rd man/denovoGeneExpr-class.Rd man/simReads.Rd man/procBam-class.Rd man/getReads.Rd man/wrapDenovo.Rd man/mergeExp.Rd man/quantileNorm.Rd man/modelPriorAS-class.Rd man/calcExp.Rd man/mergeBatches.Rd man/K562.r1l1.Rd man/getDistrs.Rd man/annotatedGenome-class.Rd man/getIsland.Rd man/simMultSamples.Rd man/modelPrior.Rd man/procGenome.Rd man/calcDenovo.Rd man/plotExpr.Rd man/simulatedSamples-class.Rd man/txLength-methods.Rd man/pathCounts.Rd man/plotPriorAS.Rd

inst/CITATION

inst/doc/casper.Rnw

inst/doc/casper.pdf inst/doc/DesignRNASeq.pdf inst/doc/casper.R

data/K562.r1l1.RData

data/datalist

data/hg19DB.RData

data/distrsGSE37704.RData

build/vignette.rds

vignettes/casper.Rnw

vignettes/references.bib

vignettes/auto/casper.el

casper documentation built on Dec. 17, 2020, 2:01 a.m.