subsetGenome: subsetGenome subsets an object of class annotatedGenome for a...

In casper: Characterization of Alternative Splicing based on Paired-End Reads

Description

~~ Methods for function subsetGenome in package casper ~~ Subset an annotatedGenome object by islands or chromosomes.

Usage

subsetGenome(islands, chr, genomeDB)

Arguments

islands	Vector of characters with the island IDs to retrieve from genome.
chr	Vector of characters with the names of chromosomes to retrieve from genome.
genomeDB	annotatedGenome object with genome to subset.

Methods

signature(islands = "character", chr = "missing", genomeDB = "annotatedGenome")

Subset annotatedGenome object by a set of island IDs.

signature(islands = "missing", chr = "character", genomeDB = "annotatedGenome")

Subset annotatedGenome object by chromosomes.

casper documentation built on Dec. 17, 2020, 2:01 a.m.